J3_7LS1_030
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7LS1|1|A2|U|354, 7LS1|1|A2|A|362, 7LS1|1|C2|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_030 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0821
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7LS1|1|A2|C|351
7LS1|1|A2|G|352
7LS1|1|A2|A|353
7LS1|1|A2|U|354
7LS1|1|A2|A|355
7LS1|1|A2|G|356
7LS1|1|A2|U|357
7LS1|1|A2|C|358
7LS1|1|A2|A|359
7LS1|1|A2|A|360
7LS1|1|A2|C|361
7LS1|1|A2|A|362
7LS1|1|A2|A|363
7LS1|1|A2|G|364
7LS1|1|A2|U|365
7LS1|1|A2|A|366
7LS1|1|A2|C|367
*
7LS1|1|A2|G|374
7LS1|1|A2|G|375
7LS1|1|A2|A|376
7LS1|1|A2|A|377
7LS1|1|A2|A|378
7LS1|1|A2|G|379
*
7LS1|1|C2|C|21
7LS1|1|C2|U|22
7LS1|1|C2|C|23
7LS1|1|C2|G|24
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain S2
- 60S ribosomal protein L26
- Chain d2
- 60S ribosomal protein L37
- Chain f2
- 60S ribosomal protein L39
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