J3_7LS1_033

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGA(A2M)CUAU*AUAG*CGAA

Length

16 nucleotides

Bulged bases

7LS1|1|A2|A2M|1347, 7LS1|1|A2|G|1454, 7LS1|1|A2|A|1455

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|U|1344
7LS1|1|A2|G|1345
7LS1|1|A2|A|1346
7LS1|1|A2|A2M|1347
7LS1|1|A2|C|1348
7LS1|1|A2|U|1349
7LS1|1|A2|A|1350
7LS1|1|A2|U|1351
*
7LS1|1|A2|A|1434
7LS1|1|A2|U|1435
7LS1|1|A2|A|1436
7LS1|1|A2|G|1437
*
7LS1|1|A2|C|1453
7LS1|1|A2|G|1454
7LS1|1|A2|A|1455
7LS1|1|A2|A|1456

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain H1

60S ribosomal protein L15

Chain d2

60S ribosomal protein L37

Chain f2

60S ribosomal protein L39