J3_7LS1_034

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUCGGAACGGAACGGGACGGGA*UCGGGCCC*GGAGCCUACG

Length

42 nucleotides

Bulged bases

7LS1|1|A2|G|1891, 7LS1|1|A2|C|1893, 7LS1|1|A2|G|1895, 7LS1|1|A2|A|1896, 7LS1|1|A2|A|1897, 7LS1|1|A2|C|2006, 7LS1|1|A2|G|2007, 7LS1|1|A2|G|2008, 7LS1|1|A2|U|2022, 7LS1|1|A2|C|2024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|1889
7LS1|1|A2|A|1890
7LS1|1|A2|G|1891
7LS1|1|A2|U|1892
7LS1|1|A2|C|1893
7LS1|1|A2|G|1894
7LS1|1|A2|G|1895
7LS1|1|A2|A|1896
7LS1|1|A2|A|1897
7LS1|1|A2|C|1898
7LS1|1|A2|G|1899
7LS1|1|A2|G|1900
7LS1|1|A2|A|1901
7LS1|1|A2|A|1902
7LS1|1|A2|C|1903
7LS1|1|A2|G|1904
7LS1|1|A2|G|1905
7LS1|1|A2|G|1906
7LS1|1|A2|A|1907
7LS1|1|A2|C|1908
7LS1|1|A2|G|1909
7LS1|1|A2|G|1910
7LS1|1|A2|G|1911
7LS1|1|A2|A|1912
*
7LS1|1|A2|U|2005
7LS1|1|A2|C|2006
7LS1|1|A2|G|2007
7LS1|1|A2|G|2008
7LS1|1|A2|G|2009
7LS1|1|A2|C|2010
7LS1|1|A2|C|2011
7LS1|1|A2|C|2012
*
7LS1|1|A2|G|2016
7LS1|1|A2|G|2017
7LS1|1|A2|A|2018
7LS1|1|A2|G|2019
7LS1|1|A2|C|2020
7LS1|1|A2|C|2021
7LS1|1|A2|U|2022
7LS1|1|A2|A|2023
7LS1|1|A2|C|2024
7LS1|1|A2|G|2025

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain K2

60S ribosomal protein L18

Chain V2

60S ribosomal protein L29

Chain k2

60S ribosomal protein L28