J3_7LS1_039

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUG*CGUUC*GUUGACGCACGUUC

Length

23 nucleotides

Bulged bases

7LS1|1|A2|U|4527, 7LS1|1|A2|U|4582, 7LS1|1|A2|G|4584, 7LS1|1|A2|C|4586, 7LS1|1|A2|A|4589, 7LS1|1|A2|C|4590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|4403
7LS1|1|A2|U|4404
7LS1|1|A2|U|4405
7LS1|1|A2|G|4406
*
7LS1|1|A2|C|4524
7LS1|1|A2|G|4525
7LS1|1|A2|U|4526
7LS1|1|A2|U|4527
7LS1|1|A2|C|4528
*
7LS1|1|A2|G|4581
7LS1|1|A2|U|4582
7LS1|1|A2|U|4583
7LS1|1|A2|G|4584
7LS1|1|A2|A|4585
7LS1|1|A2|C|4586
7LS1|1|A2|G|4587
7LS1|1|A2|C|4588
7LS1|1|A2|A|4589
7LS1|1|A2|C|4590
7LS1|1|A2|G|4591
7LS1|1|A2|U|4592
7LS1|1|A2|U|4593
7LS1|1|A2|C|4594

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I2

60S ribosomal protein L13a

Chain Z2

60S ribosomal protein L35a