J3_7LS1_042
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUAGUU(OMG)GA*UAAGAG*CAUUAAUCAAG
- Length
- 27 nucleotides
- Bulged bases
- 7LS1|1|m2|G|923
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LS1|1|m2|C|678
7LS1|1|m2|G|679
7LS1|1|m2|U|680
7LS1|1|m2|A|681
7LS1|1|m2|G|682
7LS1|1|m2|U|683
7LS1|1|m2|U|684
7LS1|1|m2|OMG|685
7LS1|1|m2|G|686
7LS1|1|m2|A|687
*
7LS1|1|m2|U|920
7LS1|1|m2|A|921
7LS1|1|m2|A|922
7LS1|1|m2|G|923
7LS1|1|m2|A|924
7LS1|1|m2|G|925
*
7LS1|1|m2|C|1021
7LS1|1|m2|A|1022
7LS1|1|m2|U|1023
7LS1|1|m2|U|1024
7LS1|1|m2|A|1025
7LS1|1|m2|A|1026
7LS1|1|m2|U|1027
7LS1|1|m2|C|1028
7LS1|1|m2|A|1029
7LS1|1|m2|A|1030
7LS1|1|m2|G|1031
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E3
- 40S ribosomal protein S23
- Chain N3
- 40S ribosomal protein S13
- Chain P3
- 40S ribosomal protein S15a
- Chain S3
- 40S ribosomal protein S27-like
- Chain t
- 40S ribosomal protein S7
- Chain w2
- 40S ribosomal protein S11
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