J3_7LVK_003

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7LVK|1|I|U|686, 7LVK|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LVK_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0653

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|U|683
7LVK|1|I|G|684
7LVK|1|I|A|685
7LVK|1|I|U|686
7LVK|1|I|C|687
7LVK|1|I|U|688
7LVK|1|I|A|689
*
7LVK|1|I|U|773
7LVK|1|I|G|774
7LVK|1|I|G|775
*
7LVK|1|I|C|791
7LVK|1|I|A|792
7LVK|1|I|A|793
7LVK|1|I|A|794

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34