J3_7M4V_016

3D structure

PDB id

7M4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAAC*GAACGUAGAG*CGUAC

Length

20 nucleotides

Bulged bases

7M4V|1|A|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4V_016 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0862

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7M4V|1|A|G|299
7M4V|1|A|G|300
7M4V|1|A|A|301
7M4V|1|A|A|302
7M4V|1|A|C|303
*
7M4V|1|A|G|318
7M4V|1|A|A|319
7M4V|1|A|A|320
7M4V|1|A|C|321
7M4V|1|A|G|322
7M4V|1|A|U|323
7M4V|1|A|A|324
7M4V|1|A|G|325
7M4V|1|A|A|326
7M4V|1|A|G|327
*
7M4V|1|A|C|339
7M4V|1|A|G|340
7M4V|1|A|U|341
7M4V|1|A|A|342
7M4V|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24