J3_7M4W_028

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAAC*GAACGUAGAG*CGUAC

Length

20 nucleotides

Bulged bases

7M4W|1|A|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4W_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0849

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7M4W|1|A|G|299
7M4W|1|A|G|300
7M4W|1|A|A|301
7M4W|1|A|A|302
7M4W|1|A|C|303
*
7M4W|1|A|G|318
7M4W|1|A|A|319
7M4W|1|A|A|320
7M4W|1|A|C|321
7M4W|1|A|G|322
7M4W|1|A|U|323
7M4W|1|A|A|324
7M4W|1|A|G|325
7M4W|1|A|A|326
7M4W|1|A|G|327
*
7M4W|1|A|C|339
7M4W|1|A|G|340
7M4W|1|A|U|341
7M4W|1|A|A|342
7M4W|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24