J3_7M4X_003

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAUCUA*UAG*CAAG

Length

14 nucleotides

Bulged bases

7M4X|1|A|U|684, 7M4X|1|A|A|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4X_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0786

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7M4X|1|A|C|681
7M4X|1|A|G|682
7M4X|1|A|A|683
7M4X|1|A|U|684
7M4X|1|A|C|685
7M4X|1|A|U|686
7M4X|1|A|A|687
*
7M4X|1|A|U|771
7M4X|1|A|A|772
7M4X|1|A|G|773
*
7M4X|1|A|C|789
7M4X|1|A|A|790
7M4X|1|A|A|791
7M4X|1|A|G|792

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain C

50S ribosomal protein L2