J3_7M4X_028

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGAAC*GAACGUAGAG*CGUAC

Length

20 nucleotides

Bulged bases

7M4X|1|A|U|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4X_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0886

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7M4X|1|A|G|299
7M4X|1|A|G|300
7M4X|1|A|A|301
7M4X|1|A|A|302
7M4X|1|A|C|303
*
7M4X|1|A|G|318
7M4X|1|A|A|319
7M4X|1|A|A|320
7M4X|1|A|C|321
7M4X|1|A|G|322
7M4X|1|A|U|323
7M4X|1|A|A|324
7M4X|1|A|G|325
7M4X|1|A|A|326
7M4X|1|A|G|327
*
7M4X|1|A|C|339
7M4X|1|A|G|340
7M4X|1|A|U|341
7M4X|1|A|A|342
7M4X|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24