3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
7M5D|1|1|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7M5D_002 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.0934
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

7M5D|1|1|A|56
7M5D|1|1|C|57
*
7M5D|1|1|G|70
7M5D|1|1|A|71
7M5D|1|1|U|72
7M5D|1|1|A|73
7M5D|1|1|A|74
7M5D|1|1|G|75
7M5D|1|1|C|76
*
7M5D|1|1|G|110
7M5D|1|1|A|111
7M5D|1|1|U|112
7M5D|1|1|U|113
7M5D|1|1|U|114

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L23
Chain Y
50S ribosomal protein L29
Chain d
50S ribosomal protein L34

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