J3_7M5D_006

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

7M5D|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.2176

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7M5D|1|1|C|1298
7M5D|1|1|G|1299
7M5D|1|1|G|1300
7M5D|1|1|A|1301
7M5D|1|1|A|1302
7M5D|1|1|G|1303
*
7M5D|1|1|C|1625
7M5D|1|1|A|1626
7M5D|1|1|G|1627
*
7M5D|1|1|C|1639
7M5D|1|1|A|1640
7M5D|1|1|A|1641
7M5D|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains