J3_7M5D_012

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_012 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.1577

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7M5D|1|1|C|2789
7M5D|1|1|U|2790
7M5D|1|1|G|2791
*
7M5D|1|1|C|2805
7M5D|1|1|C|2806
*
7M5D|1|1|G|2892
7M5D|1|1|A|2893
7M5D|1|1|G|2894

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3