J3_7M5D_014

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0984

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|G|46
7M5D|1|2|C|47
*
7M5D|1|2|G|361
7M5D|1|2|G|362
7M5D|1|2|A|363
7M5D|1|2|A|364
7M5D|1|2|U|365
7M5D|1|2|A|366
7M5D|1|2|U|367
*
7M5D|1|2|A|393
7M5D|1|2|G|394
7M5D|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 3

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16