J3_7M5D_029

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7M5D|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0835

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7M5D|1|1|G|297
7M5D|1|1|G|298
7M5D|1|1|A|299
7M5D|1|1|A|300
7M5D|1|1|G|301
*
7M5D|1|1|C|316
7M5D|1|1|G|317
7M5D|1|1|C|318
7M5D|1|1|G|319
7M5D|1|1|A|320
7M5D|1|1|U|321
7M5D|1|1|A|322
7M5D|1|1|C|323
7M5D|1|1|A|324
7M5D|1|1|G|325
*
7M5D|1|1|C|337
7M5D|1|1|G|338
7M5D|1|1|U|339
7M5D|1|1|A|340
7M5D|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24