J3_7M5D_034

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7M5D|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1425

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7M5D|1|2|C|990
7M5D|1|2|U|991
7M5D|1|2|U|992
7M5D|1|2|G|993
7M5D|1|2|A|994
7M5D|1|2|C|995
7M5D|1|2|A|996
7M5D|1|2|U|997
*
7M5D|1|2|A|1044
7M5D|1|2|C|1045
7M5D|1|2|A|1046
7M5D|1|2|G|1047
*
7M5D|1|2|C|1210
7M5D|1|2|U|1211
7M5D|1|2|U|1212
7M5D|1|2|A|1213
7M5D|1|2|C|1214
7M5D|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain A

Peptide chain release factor 1

Chain s

30S ribosomal protein S14