J3_7MD7_008

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

7MD7|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_008 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0378

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7MD7|1|1A|C|1306
7MD7|1|1A|A|1307
7MD7|1|1A|A|1308
7MD7|1|1A|G|1309
*
7MD7|1|1A|C|1605
7MD7|1|1A|G|1606
7MD7|1|1A|C|1607
7MD7|1|1A|A|1608
7MD7|1|1A|A|1609
7MD7|1|1A|A|1610
7MD7|1|1A|C|1611
*
7MD7|1|1A|G|1620
7MD7|1|1A|U|1621
7MD7|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34