J3_7MD7_023

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_023 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.2025

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MD7|1|1a|G|1002
7MD7|1|1a|G|1003
7MD7|1|1a|A|1004
7MD7|1|1a|A|1005
7MD7|1|1a|C|1006
*
7MD7|1|1a|G|1023
7MD7|1|1a|G|1024
7MD7|1|1a|U|1025
7MD7|1|1a|G|1026
7MD7|1|1a|C|1027
7MD7|1|1a|C|1028
*
7MD7|1|1a|G|1033
7MD7|1|1a|G|1034
7MD7|1|1a|A|1035
7MD7|1|1a|G|1036
7MD7|1|1a|C|1037
7MD7|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains