J3_7MD7_033

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

7MD7|1|2A|U|1083, 7MD7|1|2A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MD7|1|2A|G|1055
7MD7|1|2A|G|1056
7MD7|1|2A|A|1057
*
7MD7|1|2A|U|1081
7MD7|1|2A|U|1082
7MD7|1|2A|U|1083
7MD7|1|2A|A|1084
7MD7|1|2A|A|1085
7MD7|1|2A|A|1086
7MD7|1|2A|G|1087
7MD7|1|2A|A|1088
7MD7|1|2A|G|1089
7MD7|1|2A|U|1090
7MD7|1|2A|G|1091
*
7MD7|1|2A|C|1100
7MD7|1|2A|U|1101
7MD7|1|2A|C|1102
7MD7|1|2A|A|1103
7MD7|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2Q

50S ribosomal protein L16