J3_7MD7_048

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

7MD7|1|2a|A|975, 7MD7|1|2a|G|976, 7MD7|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_048 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.1066

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7MD7|1|2a|U|955
7MD7|1|2a|U|956
7MD7|1|2a|U|957
7MD7|1|2a|A|958
7MD7|1|2a|A|959
7MD7|1|2a|U|960
7MD7|1|2a|U|961
7MD7|1|2a|C|962
*
7MD7|1|2a|G|973
7MD7|1|2a|A|974
7MD7|1|2a|A|975
7MD7|1|2a|G|976
7MD7|1|2a|A|977
7MD7|1|2a|A|978
7MD7|1|2a|C|979
7MD7|1|2a|C|980
7MD7|1|2a|U|981
7MD7|1|2a|U|982
7MD7|1|2a|A|983
7MD7|1|2a|C|984
*
7MD7|1|2a|G|1221
7MD7|1|2a|G|1222
7MD7|1|2a|C|1223
7MD7|1|2a|G|1224
7MD7|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A