J3_7MDZ_025
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7MDZ|1|9|A|1240, 7MDZ|1|9|G|1256, 7MDZ|1|9|A|1258, 7MDZ|1|9|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MDZ_025 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.099
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7MDZ|1|9|C|1237
7MDZ|1|9|U|1238
7MDZ|1|9|U|1239
7MDZ|1|9|A|1240
7MDZ|1|9|A|1241
7MDZ|1|9|U|1242
7MDZ|1|9|U|1243
7MDZ|1|9|U|1244
*
7MDZ|1|9|G|1255
7MDZ|1|9|G|1256
7MDZ|1|9|G|1257
7MDZ|1|9|A|1258
7MDZ|1|9|A|1259
7MDZ|1|9|A|1260
7MDZ|1|9|C|1261
7MDZ|1|9|C|1262
7MDZ|1|9|U|1263
7MDZ|1|9|C|1264
7MDZ|1|9|A|1265
7MDZ|1|9|C|1266
*
7MDZ|1|9|G|1516
7MDZ|1|9|G|1517
7MDZ|1|9|C|1518
7MDZ|1|9|U|1519
7MDZ|1|9|G|1520
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- eS29
- Chain ff
- eS31
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