J3_7MDZ_031

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7MDZ|1|5|C|216, 7MDZ|1|5|C|217, 7MDZ|1|5|A|218, 7MDZ|1|5|G|219, 7MDZ|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|C|196
7MDZ|1|5|A|197
7MDZ|1|5|A|198
7MDZ|1|5|G|199
*
7MDZ|1|5|C|215
7MDZ|1|5|C|216
7MDZ|1|5|C|217
7MDZ|1|5|A|218
7MDZ|1|5|G|219
7MDZ|1|5|C|220
7MDZ|1|5|C|221
7MDZ|1|5|C|222
7MDZ|1|5|G|223
7MDZ|1|5|U|224
7MDZ|1|5|G|225
7MDZ|1|5|G|226
7MDZ|1|5|A|227
7MDZ|1|5|C|228
*
7MDZ|1|5|G|240
7MDZ|1|5|G|241
7MDZ|1|5|U|242
7MDZ|1|5|A|243
7MDZ|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24