J3_7MDZ_034

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

7MDZ|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|C|451
7MDZ|1|5|A|452
7MDZ|1|5|G|453
7MDZ|1|5|U|454
7MDZ|1|5|C|455
*
7MDZ|1|5|G|701
7MDZ|1|5|U|702
7MDZ|1|5|G|703
7MDZ|1|5|C|704
7MDZ|1|5|G|705
*
7MDZ|1|5|C|1292
7MDZ|1|5|G|1293
7MDZ|1|5|A|1294
7MDZ|1|5|U|1295
7MDZ|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28