J3_7MDZ_036

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUGGG*UCCAGU*AGGGUGUAAAU

Length

24 nucleotides

Bulged bases

7MDZ|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|A|2551
7MDZ|1|5|G|2552
7MDZ|1|5|A|2553
7MDZ|1|5|U|2554
7MDZ|1|5|G|2555
7MDZ|1|5|G|2556
7MDZ|1|5|G|2557
*
7MDZ|1|5|U|2570
7MDZ|1|5|C|2571
7MDZ|1|5|C|2572
7MDZ|1|5|A|2573
7MDZ|1|5|G|2574
7MDZ|1|5|U|2575
*
7MDZ|1|5|A|2757
7MDZ|1|5|G|2758
7MDZ|1|5|G|2759
7MDZ|1|5|G|2760
7MDZ|1|5|U|2761
7MDZ|1|5|G|2762
7MDZ|1|5|U|2763
7MDZ|1|5|A|2764
7MDZ|1|5|A|2765
7MDZ|1|5|A|2766
7MDZ|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27