J3_7MDZ_039
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 7MDZ|1|5|U|4882, 7MDZ|1|5|A|4938, 7MDZ|1|5|C|4940, 7MDZ|1|5|A|4943, 7MDZ|1|5|C|4944, 7MDZ|1|5|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MDZ|1|5|C|4749
7MDZ|1|5|G|4750
7MDZ|1|5|G|4751
7MDZ|1|5|U|4752
7MDZ|1|5|U|4753
7MDZ|1|5|G|4754
*
7MDZ|1|5|C|4879
7MDZ|1|5|C|4880
7MDZ|1|5|U|4881
7MDZ|1|5|U|4882
7MDZ|1|5|C|4883
*
7MDZ|1|5|G|4936
7MDZ|1|5|C|4937
7MDZ|1|5|A|4938
7MDZ|1|5|C|4939
7MDZ|1|5|C|4940
7MDZ|1|5|G|4941
7MDZ|1|5|C|4942
7MDZ|1|5|A|4943
7MDZ|1|5|C|4944
7MDZ|1|5|G|4945
7MDZ|1|5|U|4946
7MDZ|1|5|U|4947
7MDZ|1|5|C|4948
7MDZ|1|5|G|4949
7MDZ|1|5|U|4950
7MDZ|1|5|G|4951
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- 60S ribosomal protein L14
- Chain O
- uL13
- Chain f
- eL33
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