J3_7MDZ_040

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7MDZ|1|5|U|4989, 7MDZ|1|5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|C|4970
7MDZ|1|5|A|4971
7MDZ|1|5|U|4972
*
7MDZ|1|5|G|4986
7MDZ|1|5|C|4987
7MDZ|1|5|U|4988
7MDZ|1|5|U|4989
7MDZ|1|5|C|4990
7MDZ|1|5|U|4991
*
7MDZ|1|5|A|5060
7MDZ|1|5|A|5061
7MDZ|1|5|G|5062
7MDZ|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31