J3_7MPJ_005

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|A1|U|829
7MPJ|1|A1|A|830
7MPJ|1|A1|G|831
*
7MPJ|1|A1|C|863
7MPJ|1|A1|G|864
7MPJ|1|A1|U|865
7MPJ|1|A1|A|866
7MPJ|1|A1|OMG|867
7MPJ|1|A1|C|868
*
7MPJ|1|A1|G|891
7MPJ|1|A1|U|892
7MPJ|1|A1|C|893
7MPJ|1|A1|G|894
7MPJ|1|A1|A|895

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A

Chain Aj

60S ribosomal protein L37-A

Chain Ap

60S ribosomal protein L43-A