3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UAG*CGUA(OMG)C*GUCGA
Length
14 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7MPJ|1|A1|U|829
7MPJ|1|A1|A|830
7MPJ|1|A1|G|831
*
7MPJ|1|A1|C|863
7MPJ|1|A1|G|864
7MPJ|1|A1|U|865
7MPJ|1|A1|A|866
7MPJ|1|A1|OMG|867
7MPJ|1|A1|C|868
*
7MPJ|1|A1|G|891
7MPJ|1|A1|U|892
7MPJ|1|A1|C|893
7MPJ|1|A1|G|894
7MPJ|1|A1|A|895

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain AR
60S ribosomal protein L19-A
Chain Ag
60S ribosomal protein L34-A
Chain Aj
60S ribosomal protein L37-A
Chain Ap
60S ribosomal protein L43-A

Coloring options:

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