J3_7MPJ_015
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7MPJ|1|A3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_015 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.3258
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A3|C|9
7MPJ|1|A3|C|10
7MPJ|1|A3|A|11
7MPJ|1|A3|U|12
7MPJ|1|A3|A|13
7MPJ|1|A3|U|14
*
7MPJ|1|A3|A|66
7MPJ|1|A3|G|67
*
7MPJ|1|A3|U|111
7MPJ|1|A3|G|112
Current chains
- Chain A3
- 5S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 60S ribosomal protein L5
- Chain AI
- 60S ribosomal protein L10
- Chain AT
- 60S ribosomal protein L21-A
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