J3_7MPJ_022
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)G*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 7MPJ|1|B5|G|1199, 7MPJ|1|B5|G|1201
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|B5|C|1180
7MPJ|1|B5|PSU|1181
7MPJ|1|B5|U|1182
7MPJ|1|B5|A|1183
7MPJ|1|B5|A|1184
7MPJ|1|B5|U|1185
7MPJ|1|B5|U|1186
7MPJ|1|B5|PSU|1187
7MPJ|1|B5|G|1188
*
7MPJ|1|B5|C|1197
7MPJ|1|B5|G|1198
7MPJ|1|B5|G|1199
7MPJ|1|B5|G|1200
7MPJ|1|B5|G|1201
7MPJ|1|B5|A|1202
7MPJ|1|B5|A|1203
7MPJ|1|B5|A|1204
7MPJ|1|B5|C|1205
7MPJ|1|B5|U|1206
7MPJ|1|B5|C|1207
7MPJ|1|B5|A|1208
7MPJ|1|B5|C|1209
*
7MPJ|1|B5|G|1454
7MPJ|1|B5|G|1455
7MPJ|1|B5|C|1456
7MPJ|1|B5|C|1457
7MPJ|1|B5|G|1458
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- 40S ribosomal protein S15
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bh
- Suppressor protein STM1
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