J3_7MPJ_034

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACGGUGGCC*GGAAUAGG*CAC

Length

21 nucleotides

Bulged bases

7MPJ|1|A1|C|1232, 7MPJ|1|A1|G|1236, 7MPJ|1|A1|A|1252, 7MPJ|1|A1|U|1253, 7MPJ|1|A1|G|1261, 7MPJ|1|A1|A|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|A1|G|1230
7MPJ|1|A1|A|1231
7MPJ|1|A1|C|1232
7MPJ|1|A1|G|1233
7MPJ|1|A1|G|1234
7MPJ|1|A1|U|1235
7MPJ|1|A1|G|1236
7MPJ|1|A1|G|1237
7MPJ|1|A1|C|1238
7MPJ|1|A1|C|1239
*
7MPJ|1|A1|G|1249
7MPJ|1|A1|G|1250
7MPJ|1|A1|A|1251
7MPJ|1|A1|A|1252
7MPJ|1|A1|U|1253
7MPJ|1|A1|A|1260
7MPJ|1|A1|G|1261
7MPJ|1|A1|G|1262
*
7MPJ|1|A1|C|1277
7MPJ|1|A1|A|1278
7MPJ|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains