J3_7MPJ_037
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 7MPJ|1|A1|C|2548, 7MPJ|1|A1|G|2549, 7MPJ|1|A1|U|2550, 7MPJ|1|A1|U|2551, 7MPJ|1|A1|C|2552, 7MPJ|1|A1|U|2553, 7MPJ|1|A1|A|2554, 7MPJ|1|A1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MPJ|1|A1|A|2529
7MPJ|1|A1|G|2530
7MPJ|1|A1|C|2531
7MPJ|1|A1|U|2532
7MPJ|1|A1|G|2533
*
7MPJ|1|A1|C|2546
7MPJ|1|A1|A|2547
7MPJ|1|A1|C|2548
7MPJ|1|A1|G|2549
7MPJ|1|A1|U|2550
7MPJ|1|A1|U|2551
7MPJ|1|A1|C|2552
7MPJ|1|A1|U|2553
7MPJ|1|A1|A|2554
7MPJ|1|A1|G|2555
7MPJ|1|A1|C|2556
7MPJ|1|A1|A|2557
7MPJ|1|A1|U|2558
7MPJ|1|A1|U|2559
7MPJ|1|A1|C|2560
7MPJ|1|A1|A|2561
7MPJ|1|A1|A|2562
7MPJ|1|A1|G|2563
*
7MPJ|1|A1|U|2578
7MPJ|1|A1|G|2579
7MPJ|1|A1|A|2580
7MPJ|1|A1|U|2581
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AX
- 60S ribosomal protein L25
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- 40S ribosomal protein S1-A
Coloring options: