3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
7MPJ|1|B5|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_044 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.0922
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7MPJ|1|B5|U|633
7MPJ|1|B5|G|634
7MPJ|1|B5|A|635
*
7MPJ|1|B5|U|861
7MPJ|1|B5|A|862
7MPJ|1|B5|A|863
7MPJ|1|B5|U|864
7MPJ|1|B5|A|865
7MPJ|1|B5|G|866
*
7MPJ|1|B5|C|962
7MPJ|1|B5|A|963
7MPJ|1|B5|U|964
7MPJ|1|B5|U|965
7MPJ|1|B5|A|966

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BH
40S ribosomal protein S7-A
Chain BL
40S ribosomal protein S11-A
Chain BN
40S ribosomal protein S13
Chain BW
40S ribosomal protein S22-A
Chain BX
40S ribosomal protein S23-A
Chain Bb
40S ribosomal protein S27-A

Coloring options:


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