J3_7MQA_001
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAUUA*U(A2M)GU
- Length
- 23 nucleotides
- Bulged bases
- 7MQA|1|L1|U|44, 7MQA|1|L1|A|46, 7MQA|1|L1|C|481, 7MQA|1|L1|G|482, 7MQA|1|L1|C|483, 7MQA|1|L1|A|485, 7MQA|1|L1|U|488
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MQA|1|L1|A|40
7MQA|1|L1|G|41
7MQA|1|L1|A|42
7MQA|1|L1|U|43
7MQA|1|L1|U|44
7MQA|1|L1|A|45
7MQA|1|L1|A|46
7MQA|1|L1|G|47
*
7MQA|1|L1|C|479
7MQA|1|L1|G|480
7MQA|1|L1|C|481
7MQA|1|L1|G|482
7MQA|1|L1|C|483
7MQA|1|L1|A2M|484
7MQA|1|L1|A|485
7MQA|1|L1|A|486
7MQA|1|L1|U|487
7MQA|1|L1|U|488
7MQA|1|L1|A|489
*
7MQA|1|L1|U|511
7MQA|1|L1|A2M|512
7MQA|1|L1|G|513
7MQA|1|L1|U|514
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4, X isoform
- Chain L9
- 40S ribosomal protein S9
- Chain LF
- 40S ribosomal protein S24
- Chain NS
- Probable ATP-dependent RNA helicase DHX37
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SR
- 40S ribosomal protein S23
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