J3_7N3O_001

3D structure

PDB id

7N3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Cas12k-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GGAUAGG*CC

Length

11 nucleotides

Bulged bases

7N3O|1|B|U|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N3O|1|B|G|121
7N3O|1|B|C|122
*
7N3O|1|B|G|135
7N3O|1|B|G|136
7N3O|1|B|A|137
7N3O|1|B|U|138
7N3O|1|B|A|139
7N3O|1|B|G|140
7N3O|1|B|G|141
*
7N3O|1|B|C|149
7N3O|1|B|C|150

Current chains

Chain B

Single guide RNA

Nearby chains