J3_7N8B_016

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

7N8B|1|A3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N8B_016 not in the Motif Atlas

Homologous match to J3_7RQB_015

Geometric discrepancy: 0.3508

The information below is about J3_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08462.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7N8B|1|A3|C|9
7N8B|1|A3|C|10
7N8B|1|A3|A|11
7N8B|1|A3|U|12
7N8B|1|A3|A|13
7N8B|1|A3|U|14
*
7N8B|1|A3|A|66
7N8B|1|A3|G|67
*
7N8B|1|A3|U|111
7N8B|1|A3|G|112

Current chains

Chain A3

5S

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AD

60S ribosomal protein L5

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21-A