J3_7N8B_035

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GACGGUGGCC*GGAAUAGG*CAC

Length

21 nucleotides

Bulged bases

7N8B|1|A1|C|1232, 7N8B|1|A1|G|1236, 7N8B|1|A1|C|1238, 7N8B|1|A1|A|1252, 7N8B|1|A1|U|1253, 7N8B|1|A1|A|1278

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|A1|G|1230
7N8B|1|A1|A|1231
7N8B|1|A1|C|1232
7N8B|1|A1|G|1233
7N8B|1|A1|G|1234
7N8B|1|A1|U|1235
7N8B|1|A1|G|1236
7N8B|1|A1|G|1237
7N8B|1|A1|C|1238
7N8B|1|A1|C|1239
*
7N8B|1|A1|G|1249
7N8B|1|A1|G|1250
7N8B|1|A1|A|1251
7N8B|1|A1|A|1252
7N8B|1|A1|U|1253
7N8B|1|A1|A|1260
7N8B|1|A1|G|1261
7N8B|1|A1|G|1262
*
7N8B|1|A1|C|1277
7N8B|1|A1|A|1278
7N8B|1|A1|C|1279

Current chains

Chain A1

25S

Nearby chains