J3_7N8B_042

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7N8B|1|B5|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|A|213
7N8B|1|B5|G|214
7N8B|1|B5|A|215
7N8B|1|B5|U|216
7N8B|1|B5|A|217
7N8B|1|B5|A|218
7N8B|1|B5|A|219
7N8B|1|B5|A|220
7N8B|1|B5|A|221
7N8B|1|B5|A|222
7N8B|1|B5|U|223
7N8B|1|B5|C|224
7N8B|1|B5|A|225
7N8B|1|B5|A|226
7N8B|1|B5|U|227
7N8B|1|B5|G|228
*
7N8B|1|B5|C|237
7N8B|1|B5|U|238
7N8B|1|B5|C|239
7N8B|1|B5|U|240
7N8B|1|B5|U|241
7N8B|1|B5|U|242
7N8B|1|B5|G|243
*
7N8B|1|B5|C|250
7N8B|1|B5|A|251
7N8B|1|B5|U|252

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A