J3_7NBU_016

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7NBU|1|a|U|686, 7NBU|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0687

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NBU|1|a|U|683
7NBU|1|a|G|684
7NBU|1|a|A|685
7NBU|1|a|U|686
7NBU|1|a|C|687
7NBU|1|a|U|688
7NBU|1|a|A|689
*
7NBU|1|a|U|773
7NBU|1|a|G|774
7NBU|1|a|G|775
*
7NBU|1|a|C|791
7NBU|1|a|A|792
7NBU|1|a|A|793
7NBU|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2