J3_7NBU_023

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7NBU|1|a|A|2518, 7NBU|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0979

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7NBU|1|a|C|2517
7NBU|1|a|A|2518
7NBU|1|a|U|2519
7NBU|1|a|C|2520
*
7NBU|1|a|G|2545
7NBU|1|a|U|2546
7NBU|1|a|A|2547
*
7NBU|1|a|U|2561
7NBU|1|a|U|2562
7NBU|1|a|U|2563
7NBU|1|a|A|2564
7NBU|1|a|A|2565
7NBU|1|a|A|2566
7NBU|1|a|G|2567

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14