J3_7NBU_034

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7NBU|1|a|U|321, 7NBU|1|a|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NBU_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.067

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NBU|1|a|G|297
7NBU|1|a|G|298
7NBU|1|a|A|299
7NBU|1|a|A|300
7NBU|1|a|G|301
*
7NBU|1|a|C|316
7NBU|1|a|G|317
7NBU|1|a|C|318
7NBU|1|a|G|319
7NBU|1|a|A|320
7NBU|1|a|U|321
7NBU|1|a|A|322
7NBU|1|a|C|323
7NBU|1|a|A|324
7NBU|1|a|G|325
*
7NBU|1|a|C|337
7NBU|1|a|G|338
7NBU|1|a|U|339
7NBU|1|a|A|340
7NBU|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24