J3_7NHK_003

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7NHK|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHK_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.172

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NHK|1|A|C|271
7NHK|1|A|A|272
7NHK|1|A|A|273
7NHK|1|A|A|274
7NHK|1|A|C|275
*
7NHK|1|A|G|294
7NHK|1|A|G|295
7NHK|1|A|G|296
7NHK|1|A|U|297
7NHK|1|A|U|298
7NHK|1|A|G|299
7NHK|1|A|U|300
7NHK|1|A|A|301
*
7NHK|1|A|U|408
7NHK|1|A|G|409

Current chains

Chain A

23S rRNA

Nearby chains