J3_7NHK_004

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7NHK|1|A|U|725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHK_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1056

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHK|1|A|U|722
7NHK|1|A|G|723
7NHK|1|A|A|724
7NHK|1|A|U|725
7NHK|1|A|C|726
7NHK|1|A|U|727
7NHK|1|A|A|728
*
7NHK|1|A|U|812
7NHK|1|A|A|813
7NHK|1|A|G|814
*
7NHK|1|A|C|830
7NHK|1|A|G|831
7NHK|1|A|A|832
7NHK|1|A|A|833

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain G

50S ribosomal protein L2