J3_7NHK_020
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_020 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.094
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.2
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
7NHK|1|a|C|963
7NHK|1|a|A|964
7NHK|1|a|A|965
7NHK|1|a|G|966
*
7NHK|1|a|C|1370
7NHK|1|a|U|1371
7NHK|1|a|A|1372
7NHK|1|a|G|1373
7NHK|1|a|U|1374
7NHK|1|a|A|1375
7NHK|1|a|A|1376
*
7NHK|1|a|U|1398
7NHK|1|a|G|1399
7NHK|1|a|A|1400
7NHK|1|a|A|1401
7NHK|1|a|U|1402
7NHK|1|a|A|1403
7NHK|1|a|C|1404
7NHK|1|a|G|1405
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
Coloring options: