J3_7NHK_038
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7NHK|1|a|U|1209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHK_038 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1197
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NHK|1|a|U|1143
7NHK|1|a|A|1144
7NHK|1|a|U|1145
*
7NHK|1|a|A|1181
7NHK|1|a|G|1182
7NHK|1|a|A|1183
7NHK|1|a|C|1184
7NHK|1|a|U|1185
7NHK|1|a|G|1186
7NHK|1|a|C|1187
*
7NHK|1|a|G|1201
7NHK|1|a|A|1202
7NHK|1|a|G|1203
7NHK|1|a|G|1204
7NHK|1|a|A|1205
7NHK|1|a|A|1206
7NHK|1|a|G|1207
7NHK|1|a|G|1208
7NHK|1|a|U|1209
7NHK|1|a|G|1210
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14 type Z
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