J3_7NHL_003

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7NHL|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1306

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NHL|1|A|C|272
7NHL|1|A|A|273
7NHL|1|A|A|274
7NHL|1|A|A|275
7NHL|1|A|C|276
*
7NHL|1|A|G|295
7NHL|1|A|G|296
7NHL|1|A|G|297
7NHL|1|A|U|298
7NHL|1|A|U|299
7NHL|1|A|G|300
7NHL|1|A|U|301
7NHL|1|A|A|302
*
7NHL|1|A|U|415
7NHL|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains