J3_7NHL_004

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7NHL|1|A|U|731, 7NHL|1|A|G|837, 7NHL|1|A|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0859

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHL|1|A|U|728
7NHL|1|A|G|729
7NHL|1|A|A|730
7NHL|1|A|U|731
7NHL|1|A|C|732
7NHL|1|A|U|733
7NHL|1|A|A|734
*
7NHL|1|A|U|818
7NHL|1|A|A|819
7NHL|1|A|G|820
*
7NHL|1|A|C|836
7NHL|1|A|G|837
7NHL|1|A|A|838
7NHL|1|A|A|839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2

Chain I

50S ribosomal protein L4