J3_7NHL_007

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_007 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0928

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|C|1335
7NHL|1|A|G|1336
7NHL|1|A|A|1337
7NHL|1|A|U|1338
7NHL|1|A|U|1339
7NHL|1|A|G|1340
*
7NHL|1|A|C|1669
7NHL|1|A|A|1670
7NHL|1|A|A|1671
*
7NHL|1|A|U|1683
7NHL|1|A|A|1684
7NHL|1|A|A|1685
7NHL|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains