J3_7NHL_019

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7NHL_019 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1235

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

7NHL|1|a|C|946
7NHL|1|a|A|947
7NHL|1|a|A|948
7NHL|1|a|G|949
*
7NHL|1|a|C|1355
7NHL|1|a|U|1356
7NHL|1|a|A|1357
7NHL|1|a|G|1358
7NHL|1|a|U|1359
7NHL|1|a|A|1360
7NHL|1|a|A|1361
*
7NHL|1|a|U|1383
7NHL|1|a|G|1384
7NHL|1|a|A|1385
7NHL|1|a|A|1386
7NHL|1|a|U|1387
7NHL|1|a|A|1388
7NHL|1|a|C|1389
7NHL|1|a|G|1390

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9