J3_7NHL_021
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7NHL|1|a|A|985, 7NHL|1|a|G|986, 7NHL|1|a|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHL_021 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1099
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7NHL|1|a|U|965
7NHL|1|a|U|966
7NHL|1|a|U|967
7NHL|1|a|A|968
7NHL|1|a|A|969
7NHL|1|a|U|970
7NHL|1|a|U|971
7NHL|1|a|C|972
*
7NHL|1|a|G|983
7NHL|1|a|A|984
7NHL|1|a|A|985
7NHL|1|a|G|986
7NHL|1|a|A|987
7NHL|1|a|A|988
7NHL|1|a|C|989
7NHL|1|a|C|990
7NHL|1|a|U|991
7NHL|1|a|U|992
7NHL|1|a|A|993
7NHL|1|a|C|994
*
7NHL|1|a|G|1232
7NHL|1|a|G|1233
7NHL|1|a|C|1234
7NHL|1|a|U|1235
7NHL|1|a|A|1236
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
Coloring options: