J3_7NHL_038
3D structure
- PDB id
- 7NHL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7NHL|1|a|U|1194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7NHL_038 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1218
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NHL|1|a|U|1128
7NHL|1|a|A|1129
7NHL|1|a|A|1130
*
7NHL|1|a|U|1166
7NHL|1|a|G|1167
7NHL|1|a|A|1168
7NHL|1|a|C|1169
7NHL|1|a|U|1170
7NHL|1|a|G|1171
7NHL|1|a|C|1172
*
7NHL|1|a|G|1186
7NHL|1|a|A|1187
7NHL|1|a|G|1188
7NHL|1|a|G|1189
7NHL|1|a|A|1190
7NHL|1|a|A|1191
7NHL|1|a|G|1192
7NHL|1|a|G|1193
7NHL|1|a|U|1194
7NHL|1|a|G|1195
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14 type Z
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